FastQCFastQC Report
Wed 31 Jul 2024
EGAF00004919888

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004919888
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60969655
Total Bases6.1 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT827970.13580034198979804No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT819930.13448165320928912No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC795410.13045998046077184No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT786480.12899531742470907No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)