FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004919941

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004919941
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2757071
Sequences flagged as poor quality0
Sequence length150
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT113380.41123351556778914No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT61480.2229902675701859No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT60380.21900052628314615No Hit
GTATCTGATCGTCTTCGATCCCTTAACTTTCGTTCTTGATCAATGAAAAC57070.20699503204669015No Hit
CTATTAATCATTACCCCATGTCCCCAAACCAACGAAATAGACGTGGAGTC55330.20068398673809998No Hit
GGTGTGTACTGCTCCTTCACTACTTAATTGTGCTGTTGAGTATCGCTAGC50550.18334674732714537No Hit
GATTAATAGAGACAGTTGGGGCTGTTCGTATTTAATTGTCAGAGGTGAAA50410.18283896207243122No Hit
GGATAATGGAATAGGACTCCACGTCTATTTCGTTGGTTTGGGGACATGGG44380.16096792574438598No Hit
CTACTGCACATCGTTTACTTTGAATAAATTAGAGTGTTTAAAGCAGGCAT41200.1494339463873074No Hit
GGGTAATGATTAATAGAGACAGTTGGGGCTGTTCGTATTTAATTGTCAGA38900.14109176005986063No Hit
GAATAGGACTCCACGTCTATTTCGTTGGTTTGGGGACATGGGGTAATGAT37240.13507087775396426No Hit
GTTTAAAGCAGGCATGCGTAGCCTTGAATACATTAGCATGGGATAATGGA36090.13089978459024088No Hit
GTATTAGCTCTAGAATTACTACGGTTATCCAAGTAGCAAGGTACAATCAA34920.12665615067584404No Hit
TTCTTGATCAATGAAAACATCCTTGCTGAATGCTTTCGCAGAAGTTCGTC34270.1242985762789569No Hit
GTCCTATTCCATTATCCCATGCTAATGTATTCAAGGCTACGCATGCCTGC33730.12233997601077376No Hit
GTCATATGCTTGTCTTAAAGATTAAGCCATGCATGTCTAAGTATAAGCGA32220.11686314933492827No Hit
TCGTTTACTTTGAATAAATTAGAGTGTTTAAAGCAGGCATGCGTAGCCTT31750.11515844169410218No Hit
GTGTTGTATCTAATAAATGCAACCCTTCCGTGAAGTCAGGCATTTCAGCA31050.11261951542053143No Hit
ACTGCACATCGTTTACTTTGAATAAATTAGAGTGTTTAAAGCAGGCATGC30820.11178529678778674No Hit
AAATTAGAGTGTTTAAAGCAGGCATGCGTAGCCTTGAATACATTAGCATG30030.10891993713618546No Hit
CCCTTAACTTTCGTTCTTGATCAATGAAAACATCCTTGCTGAATGCTTTC29800.10808571850344079No Hit
GCCTTGAATACATTAGCATGGGATAATGGAATAGGACTCCACGTCTATTT29590.10732404062136955No Hit
GCCCCAACTGTCTCTATTAATCATTACCCCATGTCCCCAAACCAACGAAA29200.10590949598323729No Hit
TCTTCGATCCCTTAACTTTCGTTCTTGATCAATGAAAACATCCTTGCTGA28120.10199229544687097No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)