FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004920653

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004920653
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4222477
Sequences flagged as poor quality0
Sequence length125
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATA56990.1349681715258603No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC53010.12554242450580547No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC52340.12395567814815805No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)