FastQCFastQC Report
Mon 12 Sep 2022
EGAF00004920871

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004920871
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3766339
Sequences flagged as poor quality0
Sequence length125
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT184240.48917529728471065No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT84440.22419649426140345No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT77390.20547805176326403No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG71970.19108741937462348No Hit
GTACATGCTAAGACTTCACCAGTCAAAGCGAACTACTATACTCAATTGAT45060.11963872609449124No Hit
CATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATG43400.11523126303819171No Hit
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCCCAACCGA42560.11300098052777512No Hit
TACTAGAAGTGTGAAAACGTAGGCTTGGATTAAGGCGACAGCGATTTCTA41880.11119551373362833No Hit
GGAGCAATAGCAATTCCCTGTAGCTCTCAAAGCAAATTTTGAGCTCATTT40600.10779698800346968No Hit
GTACGGGGGAAGGCGCTTTGTGAAGTAGGCCTTATTTCTCTTGTCCTTTC39750.10554015451078622No Hit
GGTAGAGGCTTACTAGAAGTGTGAAAACGTAGGCTTGGATTAAGGCGACA37750.10022995805741332No Hit
GTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGA37700.10009720314607898No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)