FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004921040

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004921040
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6791119
Sequences flagged as poor quality0
Sequence length125
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA280180.41256823801791725No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC194280.2860795106078983No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATA191850.2825013079582319No Hit
CTATTAATGATATTAAAATCCCAACTATACCAAAGAATATCCCAATTATC179870.2648606216442386No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC163120.24019605605497416No Hit
TTGATATTCTCTGCATCCTATTTAGGGCTATTGATATTTAACAAATATCC144690.21305767134989093No Hit
GTCTTAGCAGTAGTTTATAAGGAATATATCCCATTTTTAGTTATAATGAT144350.21255701748121333No Hit
CTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAAC134860.19858288449959424No Hit
TCCTGTAACAGTGCGAGACCACTTCATGCCTTGCAGGTGCTGCTGCTTCT130330.19191240795515435No Hit
GAATATATCCCATTTTTAGTTATAATGATGCCTTATGTGATAGATGCCTC117050.17235745684915843No Hit
ATATAAGCCTTGGTAGGGATAGATAGCCACCTATATAGTATAGCTTCCCA104070.15324425915670156No Hit
ATGTGATAGATGCCTCTTTAAAATATCTAAGTGCTGGGGTTATGAGTAGG101820.1499311085551586No Hit
CCATCATGCTATTAATGATATTAAAATCCCAACTATACCAAAGAATATCC96850.14261272700419475No Hit
GGTTTATACTTCAATATAAGCCTTGGTAGGGATAGATAGCCACCTATATA96600.14224459915957885No Hit
ATCCTATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTC92400.13606005137003194No Hit
GTTATAATGATGCCTTATGTGATAGATGCCTCTTTAAAATATCTAAGTGC90860.13379238384719808No Hit
ATTAATGATATTAAAATCCCAACTATACCAAAGAATATCCCAATTATCCA86870.12791706344712853No Hit
ATACCAAAGAATATCCCAATTATCCATAAAACTGTAACTAAGTGAGGCTC86160.1268715803684194No Hit
GAGTAGGGATGAGCATAAACCAACAACTCTCAAAGAAGATGGGAAGCTAT82690.12176196588515088No Hit
GATATTCTCTGCATCCTATTTAGGGCTATTGATATTTAACAAATATCCAG79510.11707937970163682No Hit
GCCTTATGTGATAGATGCCTCTTTAAAATATCTAAGTGCTGGGGTTATGA73310.1079498091551628No Hit
GTTTATAAGGAATATATCCCATTTTTAGTTATAATGATGCCTTATGTGAT71720.10560851606340575No Hit
TTTTAATACAGTAAGAATAGGTATCCTGAATAAATGAGAACTCTAGAAAA70470.10376787684032632No Hit
GTATAAAGACAACCTCTGGAATTCATCCCAAAAACATCCAAAGTTTGGAA70270.10347337456463361No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)