EGAF00004921220 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004921220
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4822114
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT	12481	0.2588283893744528	No Hit
ATTCTATACCAACACCTATTCTGATTTTTCGGTCACCCTGAAGTTTATAT	9373	0.19437532999012466	No Hit
ATATAGTACCGCAAGGGAAAGATGAAAAATTATAACCAAGCATAATATAG	9330	0.19348360490855254	No Hit
AGATATAGTACCGCAAGGGAAAGATGAAAAATTATAACCAAGCATAATAT	7964	0.1651557802241921	No Hit
ATATTATGCTTGGTTATAATTTTTCATCTTTCCCTTGCGGTACTATATCT	7766	0.1610496972904415	No Hit
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA	6339	0.13145686725780434	No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC	5775	0.11976075223439346	No Hit
GAGTTAGCCGGTGCTTCTTCTGCGGGTAACGTCAATGAGCAAAGGTATTA	5621	0.11656713217480963	No Hit
ACCTTAGCCAAACCATTTACCCAAATAAAGTATAGGCGATAGAAATTGAA	5366	0.11127899506316108	No Hit
TTGATATTCTCTGCATCCTATTTAGGGCTATTGATATTTAACAAATATCC	5354	0.11103014155202469	No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATA	5157	0.10694479641086876	No Hit
GTTAATACCTTTGCTCATTGACGTTACCCGCAGAAGAAGCACCGGCTAAC	5080	0.10534798638107686	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	6335	76.84022	1
GTATCAA	14360	62.202553	1
CAACGCA	19170	45.724983	5
AACGCAG	19360	45.397297	6
ATCAACG	19425	45.36981	3
ACGCAGA	19625	44.844936	7
CGCAGAG	20070	43.87935	8
TCAACGC	20175	43.59471	4
TATCAAC	20675	42.685223	2
GCAGAGT	20880	42.12014	9
CGGACAT	630	38.186703	14-15
CTCTGCA	2255	34.831585	9
TCTCTGC	2475	32.697124	8
AGAGTAC	21425	32.078217	10-11
CAGAGTA	21380	31.687302	10-11
TCTATAC	4685	30.23015	3
TTCTCTG	2625	30.1493	7
GTCTCGG	1730	29.58246	1
GGCTTTT	1980	25.845152	8
AGTACGG	26310	25.591654	12-13