FastQCFastQC Report
Mon 6 May 2024
EGAF00004922738

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004922738
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16321621
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAAACGATCTCGTAT489210.2997312583106788TruSeq Adapter, Index 19 (97% over 40bp)
CCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCGGGTT248240.15209273637710372No Hit
CTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAA202460.12404405175196753No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)