FastQCFastQC Report
Fri 3 May 2024
EGAF00004922739

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004922739
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16321621
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG501820.3074572066095641Illumina Single End PCR Primer 1 (100% over 50bp)
CCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCGGGTT215310.13191704426907105No Hit
CTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAA200480.12283093695166673No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)