FastQCFastQC Report
Wed 1 May 2024
EGAF00004922757

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004922757
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19096418
Total Bases1.9 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATGCC241110.1262592806671911TruSeq Adapter, Index 7 (100% over 50bp)
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG193980.1015792595239589No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)