FastQCFastQC Report
Wed 1 May 2024
EGAF00004922814

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004922814
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17600614
Total Bases1.7 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTTCCGTATCTCGTAT302900.17209626891425492TruSeq Adapter, Index 14 (97% over 44bp)
CTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCAAT208110.11824019321144137No Hit
CCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTCC183930.10450203612214892No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)