FastQCFastQC Report
Wed 1 May 2024
EGAF00004922882

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004922882
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23179590
Total Bases2.3 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCGGGTT665270.2870068021047827No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATGTCAGAATCTCGTAT372580.16073623390232528TruSeq Adapter, Index 15 (97% over 40bp)
CCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTCC238150.10274124779601364No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)