FastQCFastQC Report
Wed 8 May 2024
EGAF00004922894

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004922894
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7369439
Total Bases744.3 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTCC111500.1513005264037059No Hit
CTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGT78600.10665669394915948No Hit
CTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCAAT77660.10538115587902959No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)