FastQCFastQC Report
Fri 10 May 2024
EGAF00004922898

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004922898
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13472634
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTCC308790.22919794303029387No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGC294430.2185392997390117TruSeq Adapter, Index 2 (100% over 50bp)
CTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACTAACCAGGATTC151830.11269511218073615No Hit
CCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCGGGTT149840.11121804392518939No Hit
CTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCAAT147910.10978551039091539No Hit
CTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAA138200.10257830799827265No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)