FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004922915

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004922915
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10252108
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCGCGA32400.034.886299
GTGCGCG42000.027.9299748
ACGTGCG71100.019.7717466
TAACACG73650.018.9567342
AACACGT74300.018.7919033
CGCGAGT33900.018.5626110-11
GTATCGA15600.018.2659874
CGACCGT7800.018.2640271
CGAGTCG38300.016.49724612-13
CGTATCG22200.016.2582173
CGTGCGC86650.015.8946987
ACACGTG86500.015.86712554
CTAACAC98800.015.2841061
TTGAACG21350.014.9038957
CACGTGC94050.014.5935815
CTCGGAT33200.014.5892161
TCGCACG45250.014.42994124-25
GTCTAAC22300.014.2672341
ACTTAGG29500.013.8452026
CTCAGAT61400.013.7664361
Produced by FastQC (version 0.11.5)