FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004922919

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004922919
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11368101
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATC148250.1304087639615447No Hit
CCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCGGGTT117580.10342976368700454No Hit
CCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTCC114730.10092274866312324No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)