FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004923346

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004923346
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6062
Sequences flagged as poor quality0
Sequence length125
%GC47

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAAC80.13196964698119432No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC80.13196964698119432No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA70.11547344110854503No Hit
CCGTATTACCGCGGCTGCTGGCACGGAGTTAGCCGGTGCTTCTTCTGCGG70.11547344110854503No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)