FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004923958

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004923958
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20675444
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA378990.18330440690898828No Hit
AGACAGGGTGTTGGCTTTACACCAACGAAAAAGAAAAACAGATGAATAAG286820.13872495313764485No Hit
CTCCTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTA285040.1378640284581071No Hit
CTCTTATTCTCATGGTAGGCTGAGATGCTTTTAAATGTGATGTTATAAGC243370.11770968497701911No Hit
GACAGGGTGTTGGCTTTACACCAACGAAAAAGAAAAACAGATGAATAAGC238830.11551384337864763No Hit
GTGATGTTATAAGCCTAAGGCAGCTTGACTTGCAGCAACAAGTTTTTTAC229820.11115601677042582No Hit
GGCTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTT224280.10847650962175226No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)