FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004923959

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004923959
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18337254
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTCA1807916698.5925482626788No Hit
ATGTCG724190.39492827006704495No Hit
ATGTTA295830.16132731760164307No Hit
ATTTCA236480.12896151190358163No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)