FastQCFastQC Report
Tue 13 Sep 2022
EGAF00004923962

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004923962
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6376360
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC266110.4173384187843849No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC213660.3350814571322824No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT181740.28502154834419635No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT138820.21771041785595543No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA121960.1912689998682634No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG111110.1742530221003833No Hit
CTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACTATTCCTC103360.16209875226618323No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT103130.1617380449033618No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT94710.1485330188383341No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT92280.1447220671354817No Hit
ACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAA89600.1405190422121712No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA88950.13949965183898022No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACT80550.12632599163158917No Hit
CTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAG77320.12126040562327096No Hit
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG76150.11942550295152721No Hit
CCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTA76030.11923730780570732No Hit
CAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCC75630.11860999065297442No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT75550.11848452722242785No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG74840.11737103927632693No Hit
TTTACATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTA70330.11029803837926341No Hit
CAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCA67000.10507562308276196No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC65810.10320935455338157No Hit
CAAGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGA65360.10250362275655703No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT64270.10079418351535986No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)