FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004923971

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004923971
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16905758
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT365220.21603290429213526No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC341650.20209090890807735No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG284730.1684219069029617No Hit
CAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTGTCGC266270.15750255031451416No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC231420.13688827203133985No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA213660.12638297555188002No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT208190.1231473915573617No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT201750.11933803855467469No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG182630.10802828243489586No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC174400.1031601185820831No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)