FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004924013

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924013
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21096359
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA389610.1846811575400286No Hit
AGACAGGGTGTTGGCTTTACACCAACGAAAAAGAAAAACAGATGAATAAG292350.1385784153559389No Hit
CTCCTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTA291150.1380095968218971No Hit
CTCTTATTCTCATGGTAGGCTGAGATGCTTTTAAATGTGATGTTATAAGC248620.11784971994456485No Hit
GACAGGGTGTTGGCTTTACACCAACGAAAAAGAAAAACAGATGAATAAGC245120.11619066588694285No Hit
GTGATGTTATAAGCCTAAGGCAGCTTGACTTGCAGCAACAAGTTTTTTAC233230.11055462224547846No Hit
GGCTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTT230460.10924159946273193No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)