FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004924018

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924018
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3552207
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGCTTCAATCGGGAGTACTACTCGATTGTCAACGTCAAGGAGTCGCA107640.30302288126789906No Hit
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG106330.2993350331216621No Hit
CTCAGGAGTTTGATAGTTCTTGGGCAGTGAGAGTGAGTAGTAGAATGTTT76010.21397964701944452No Hit
CTGCTGTTAGAGAAATGAATGAGCCTACAGATGATAGGATGTTTCATGTG69600.19593452746419338No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA69580.19587822443905997No Hit
GGGAAGGTTAATGGTTGATATTGCTAGGGTGGCGCTTCCAATTAGGTGCA66780.18799580092038554No Hit
GTTGGTTAGTAGGCCTAGTATGAGGAGCGTTATGGAGTGGAAGTGAAATC60270.16966916623946746No Hit
CTCCTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTA59780.16828974212369943No Hit
GTGAGTGTTAGGAAAAGGGCATACAGGACTAGGAAGCAGATAAGGAAAAT54660.1538761676895519No Hit
GGCCAATTGATTTGATGGTAAGGGAGGGATCGTTGACCTCGTCTGTTATG49450.13920922964230406No Hit
GTCGTTACCTAGAAGGTTGCCTGGCTGGCCCAGCTCGGCTCGAATAAGGA48260.13585919964686743No Hit
CTCCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGG46770.13166462427442996No Hit
CTCAGGGTTTGTTATAATTTTTTATTTTTATGGGCTTTGGTGAGGGGGGT44310.12473935218302312No Hit
GGCGGATGAAGCAGATAGTGAGGAAAGTTGAGCCAATAATGACGTGAAGT42130.11860232244348373No Hit
CTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCCAGGTTT41450.1166880195889485No Hit
CTCGTGTTACATCGCGCCATCATTGGTATATGGTTAGTGTGTTGGTTAGT41120.11575901967424758No Hit
CTTGGTTATAATTTTTCATCTTTCCCTTGCGGTACTATATCTATTGCGCC40240.11328168656837846No Hit
GTCCTTTAGTGTTGTGTATGGCTATCATTTGTTTTGAGGTTAGTTTGATT38430.10818626279380678No Hit
GGCGTAGGTTTGGTCTAGGGTGTAGCCTGAGAATAGGGGAAATCAGTGAA37250.10486438431093682No Hit
GTCTGTTTGTCGTAGGCAGATGGAGCTTGTTATAATTATGCCTCATAGGG36730.10340050565746872No Hit
GGGGCAATGAATGAAGCGAACAGATTTTCGTTCATTTTGGTTCTCAGGGT36540.10286562691870153No Hit
GTTGGTATAGAATGGGGTCTCCTCCTCCGGCGGGGTCGAAGAAGGTGGTG36510.10278117238100146No Hit
GGGAGATTAGTATAGAGAGGTAGAGTTTTTTTCGTGATAGTGGTTCACTG36300.10218999061710086No Hit
GGGGGGTAAGGCGAGGTTAGCGAGGCTTGCTAGAAGTCATCAAAAAGCTA36150.10176771792860045No Hit
GTGGGGATCAATAGAGGGGGAAATAGAATGATCAGTACTGCGGCGGGTAG36100.10162696036576696No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)