FastQCFastQC Report
Thu 2 May 2024
EGAF00004924022

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924022
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19702851
Total Bases2.9 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG463560.23527559539479848No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA355630.1804967210075334No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC345080.17514216597384816No Hit
GGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGC340400.17276687521009015No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG282190.14322292748394636No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA274160.13914737516920772No Hit
CAAGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGA263650.13381312176598198No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT257540.13071204771329795No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT238750.12117535680496187No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT233600.11856152188330511No Hit
CAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGCTGC228040.11573959524943878No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG211640.10741592676105606No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)