FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004924031

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924031
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13489086
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG411310.30492058542735956No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC346730.257044843512748No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG316180.23439690428246956No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC308760.22889616094077833No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT292170.21659732912963858No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT285560.2116970712470808No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACT256480.1901389019241185No Hit
AAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATC239190.1773211320618758No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT230110.17058976419899763No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA229450.17010047975081483No Hit
GGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGC212520.15754959231485366No Hit
ATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGC205950.15267898803521604No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA194050.143857041166466No Hit
ACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAA191470.14194438377811514No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT178110.13204008040277895No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT169430.12560524856910246No Hit
AATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGG161950.120060024823031No Hit
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG161600.11980055579747953No Hit
GCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCTC158560.11754688197554676No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT157730.11693156971495325No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT149680.1109637821272694No Hit
CAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCA135530.10047382009425992No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)