FastQCFastQC Report
Mon 12 Sep 2022
EGAF00004924047

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924047
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4961886
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAA141790.2857582782030865No Hit
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG73670.14847177061302902No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA64670.13033350625145357No Hit
CTTGGTTATAATTTTTCATCTTTCCCTTGCGGTACTATATCTATTGCGCC63930.12884213784839071No Hit
CTCAGGGTTTGTTATAATTTTTTATTTTTATGGGCTTTGGTGAGGGGGGT60500.12192944376392363No Hit
CTCTAGAGGGGGTAGAGGGGGTGCTATAGGGTAAATACGGGCCCTATTTC57800.11648796445545102No Hit
GTAAGATTTGCCGAGTTCCTTTTACTTTTTTTAACCTTTCCTTATGAGCA57300.11548028310203015No Hit
GGGGGTCTTAGCTTTGGCTCTCCTTGCAAAGTTATTTCTAGTTAATTCAT54010.10884973979652093No Hit
CTGAGATGTTAGTATTAGTTAGTTTTGTTGTGAGTGTTAGGAAAAGGGCA51560.10391210116475873No Hit

[OK]Adapter Content

Adapter graph