FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004924058

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924058
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17113276
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGT338310.1976886249015092Illumina Single End PCR Primer 1 (100% over 50bp)
CCCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTT294520.17210030388103364No Hit
CTTCTGTCAACCCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTAT275550.16101534270819917No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT242330.14160351296852808No Hit
CCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTT219840.1284616691742715No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)