FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004924087

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924087
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12158629
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC473160.3891557181323651No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC378570.31135911787422743No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA333360.274175649244664No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT292510.2405781112327714No Hit
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAAC288580.23734583890996264No Hit
CAACCCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCT199230.16385893508223665No Hit
TGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAG193390.15905576196131982No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC183790.15116013491323735No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG175130.14403762134694628No Hit
GGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCGGG170320.14008158321139663No Hit
ATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAA167750.13796785805373288No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC164470.13527018547897135No Hit
GACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAA160800.1322517530553815No Hit
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAAC160450.13196389165258682No Hit
GCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACCAGGATT155700.12805720118608765No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAG155450.1278515858983772No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA149180.12269475448259833No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT146870.12079486922415349No Hit
GAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCG143910.11836038421766139No Hit
CCCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAG139220.11450304142021275No Hit
CCCAACCCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCG137130.11278409761495314No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA129780.106739008156265No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)