FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004924091

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924091
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18603304
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA1380020.741814464785395No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT1226880.6594957540875535No Hit
TGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAG854230.45918187435952235No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA535050.2876102008546439No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC513540.27604773861675325No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT467040.2510521786882588No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG417520.22443325121172022No Hit
CGGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCG401460.21580037610523378No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG399830.21492418766042848No Hit
GGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCGGG361740.1944493300759908No Hit
GAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCG333900.17948424645428576No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC297440.15988557731465336No Hit
TGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTC293790.15792356024499735No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT292260.1571011256925114No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC286430.1539672737702937No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT280980.15103768663888953No Hit
GGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGG270320.14530752171764758No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT260020.13977087080875528No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG255550.13736807182208063No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT246370.13243346450716498No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC239210.12858468581710003No Hit
CCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCGGGTT229630.12343506293290697No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA227910.12251049598501428No Hit
TTTACATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTA225830.12139241502477194No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT225760.1213547873001484No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC224330.1205861066399818No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT220700.11863484034878966No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC214520.11531284980345427No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACAAGCCC205510.11046962410548149No Hit
CTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGTGGAA201620.10837859769425905No Hit
CAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTGTCGC194410.10450294205803443No Hit
AATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGG194410.10450294205803443No Hit
CCCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTT191710.10305158696541215No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)