FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004924132

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924132
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16495898
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA524590.31801239314161617No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAACCAAACCATTTAC502790.3047969864993103No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA500510.303414824703693No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC464080.2813305465395094No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT418050.2534266397622003No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG402540.24402430228411937No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG385640.23377933107976298No Hit
TGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAG276010.16732038474049732No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT267860.16237976253247927No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG243460.14758820647411858No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC229740.13927098724786005No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT220650.13376052640480682No Hit
ACCCACTCCACCTTACTACCAGACAACCTTAACCAAACCATTTACCCAAA218440.13242079940116022No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT210970.12789240088657192No Hit
CTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGTGGAA192040.11641682071506505No Hit
CCCCAAACCCACTCCACCTTACTACCAGACAACCTTAACCAAACCATTTA191340.11599247279535797No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT185130.11222790053624239No Hit
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG183750.1113913289231056No Hit
GTCCTTCTGATCGAGGCCCAGCCCGTGGACGGTGTGAGGCCGGTAGCGGC183010.11094273255084384No Hit
AATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGG179460.10879068238661516No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA172510.10457751375523783No Hit
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAAC170540.10338327746691936No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)