FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004924142

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924142
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12714357
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT625690.49211297118682445No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG365830.2877298474472598No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA247040.1943000342054262No Hit
CTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGTGGAA202000.1588755137204343No Hit
GACAGGTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCT168350.13240936997443128No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT158640.12477233414163218No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC152240.11973865449900455No Hit
CAAACTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGT149370.11748136378426373No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA140200.11026904467131135No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)