FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004924161

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924161
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23307342
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC630600.2705585218597642No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT520120.2231571493652086No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA498520.21388968334527378No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG453080.19439368075518865No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG336530.14438797868929026No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT334200.1433882936973251No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG299190.1283672758566807No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT288470.12376786679493526No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA266960.11453901521675015No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT250530.10748973435066084No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)