FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004924224

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924224
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17314507
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGCTT1707696398.62806373869034No Hit
NAGCTT342420.1977647991941093No Hit
TAGTTT276450.15966380099647076No Hit
TAGCGT227250.1312483225771314No Hit
TAGCTG217050.1253573087584879No Hit
TATCTT175900.10159111085288192No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)