FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004924283

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924283
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13497125
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG407970.302264371116071No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC346860.256988062272521No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG317860.23550200505663244No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC310460.2300193559739574No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT288410.21368254350463525No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT287980.21336395713902034No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACT257190.19055169156394416No Hit
AAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATC240290.17803050649675395No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT231530.17154023542050623No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA230470.17075488298433925No Hit
GGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGC214040.15858192022375134No Hit
ATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGC206780.15320299693453235No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA193840.14361577002509793No Hit
ACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAA189080.14008909304759348No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT177250.1313242635005603No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT171070.126745510618002No Hit
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG164310.12173703659112589No Hit
AATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGG160910.11921798160719412No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT158990.11779545643979736No Hit
GCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCTC158410.11736573529547958No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT151760.11243876010631894No Hit
CAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCA135790.10060661066708652No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)