FastQCFastQC Report
Sat 10 Sep 2022
EGAF00004924312

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924312
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20293451
Sequences flagged as poor quality0
Sequence length6
%GC83

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTCC1993735398.24525656084813No Hit
NCGTCC970490.47822817321706396No Hit
CTGTCC535840.2640457751616519No Hit
TCGTCC244770.12061526647192732No Hit
CCGTCA244540.12050192941555381No Hit
CCGTCT241450.11897927070166628No Hit
CCGTTC238220.11738762421433398No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)