FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004924327

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924327
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18018341
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGACGGAACAGATCCGGGG1047260.5812188813609421No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG446070.24756441228412762No Hit
CAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGCTGC393690.21849403338520457No Hit
GGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGC361540.20065110322864907No Hit
CAAGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGA323850.17973352818664048No Hit
CAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTGTCGC319520.17733042126353366No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC271550.1507075484918395No Hit
CCTAGAGGCAGCTGCTCCAGGAACAGAGGTGCCATGCAGCCCCGGGTACT251080.13934690213710574No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT244140.13549527117951646No Hit
CGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGCTGCTCGCAG213460.11846817639870395No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC199190.11054846836343035No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG195920.10873365089494089No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA189150.104976368246111No Hit
CAGCATTCGGGCCGAGATGTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGC180270.10004805658856161No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)