FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004924341

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924341
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13516830
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG405950.30032929318486656No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC340430.2518563894049123No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG316610.23423391431274934No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC305920.2263252552558551No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT284780.210685493566169No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT284140.21021200976856258No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACT252290.18664879265330703No Hit
AAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATC238970.176794411115624No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT230100.17023222160817292No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA227820.16854543557920015No Hit
GGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGC210840.1559833185739556No Hit
ATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGC205100.15173676076417328No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA189490.14018819501317986No Hit
ACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAA185760.13742867225525512No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT175890.13012666431404404No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT167950.12425250594998977No Hit
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG162380.12013171727394663No Hit
AATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGG160140.11847452398232425No Hit
GCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCTC157850.11678033976901389No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT155400.11496778460630191No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT148820.11009977931216121No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)