FastQCFastQC Report
Mon 12 Sep 2022
EGAF00004924346

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924346
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3529408
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC49230.1394851487841587No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACAAGCCC46650.13217514098681707No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT41740.11826345948102344No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC41340.11713012493879994No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA38410.10882844941701271No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG37910.10741178123923331No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)