FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004924358

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924358
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences564428
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC26630.47180508408512684No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT22730.40270858284847666No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC17750.3144776658847541No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT14770.26168085211931374No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT12710.2251837258250831No Hit
CTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACTATTCCTC12180.21579368847753833No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG11010.19506473810654326No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA10700.18957245211080953No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG10350.18337148405111015No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT9680.1715010594796856No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG9450.16742613761188319No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACT7740.13712997937735194No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT7600.1346495921534722No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT7320.1296888177057127No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC7220.12791711254579857No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA7190.12738560099782437No Hit
CTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAG7010.12419653170997896No Hit
CTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAG6710.11888141623023663No Hit
CTCATTCTTGGCAGGATGGCTTCTCATCGTCTGCTCCTCCTCTGCCTTGC6570.11640102900635688No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT6460.11445215333045135No Hit
ACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAA6230.11037723146264891No Hit
CAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCA6130.1086055263027348No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT5890.10435343391894095No Hit
ATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGC5690.10081002359911273No Hit
CCAACCTCCTACTCCTCATTGTACCCATTCTAATCGCAATGGCATTCCTA5650.10010134153514709No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)