FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004924363

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924363
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19515113
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTCA1911906497.97055236113673No Hit
NTGTCA1077010.5518850954129756No Hit
ATGTCG755540.3871563541548542No Hit
ATGTTA374330.19181544067923154No Hit
ATTTCA264410.13548986367642352No Hit
ATGTCC249270.1277317738308766No Hit
ATGTAA248890.1275370529496806No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)