FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004924365

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924365
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13651491
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC573540.42012993306005914No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC508740.37266259048187483No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG389700.2854633241160251No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT342490.2508810209815177No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT316010.23148387234771645No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC315850.23136666903270856No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA264520.1937663805367487No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG257520.18863873550515473No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT230960.16918298521384953No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC226750.16609907298770515No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC214190.15689861275958794No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA205820.15076741434323915No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT201820.14783733146804257No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT199800.14635763961606832No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG199780.14634298920169234No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA196570.1439915976943471No Hit
CTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGA192120.1407318804956909No Hit
CTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAG189380.13872477372618128No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT187430.13729635832452294No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT179120.1312091111513021No Hit
CTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAG177900.1303154358743671No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT176440.12924595562492036No Hit
ATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGC163620.1198550400099154No Hit
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAAC163580.11982573918116345No Hit
ACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAA155530.11392894739483035No Hit
CAACCCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCT153550.11247855637160804No Hit
CAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCC140510.10292648619846727No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)