FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004924380

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924380
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20533906
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT612060.29807285569535574No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC495480.24129846508501598No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG378560.18435849467704782No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC351350.17110724087273022No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA336070.16366588996754927No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT325070.15830889651486668No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT306500.14926531756792885No Hit
CAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTGTCGC286560.1395545494364297No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA275360.13410015610278922No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG254590.12398517846531489No Hit
TGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAG236870.115355549012448No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC225420.10977940582761021No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG223430.10881027701207943No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC222900.1085521673275411No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG217050.10570322080952353No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC214370.10439806240468813No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA213110.10378444315465357No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT208580.10157833585095792No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)