FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004924390

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924390
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3097588
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC113690.36702750656317107No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT107530.3471410658873937No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC81830.2641732857952704No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA71100.22953343052723604No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT67570.2181374669581623No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT51390.16590327700133134No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT46980.151666393335718No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG46330.14956798644622848No Hit
CTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACTATTCCTC45090.1455648717647408No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT44020.14211057119281195No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG41850.13510512050020854No Hit
CAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCA40690.13136027128204267No Hit
ATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGC34430.11115099877711304No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC33620.10853606096097995No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT31110.10043298204925896No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)