FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004924393

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924393
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences565190
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC26920.4763000053079496No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT22470.39756542047806936No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC18290.32360799023337283No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT15070.2666359985137741No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT13670.2418655673313399No Hit
CTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACTATTCCTC12460.2204568375236646No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA10990.19444788478210867No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG10920.19320936322298696No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG10790.19090925175604664No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT9560.16914665864576514No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG8200.14508395406854332No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT7800.13800668801641924No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT7750.13712202975990376No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC7310.12933703710256728No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACT7300.1291601054512642No Hit
CTCATTCTTGGCAGGATGGCTTCTCATCGTCTGCTCCTCCTCTGCCTTGC7100.12562147242520216No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA7040.12455988251738354No Hit
CTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAG6800.12031352288610911No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT6310.11164387197225713No Hit
ATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGC6290.11129000866965091No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT6160.10898989720271059No Hit
CTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAG6080.10757444399228577No Hit
CAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCA6070.10739751234098269No Hit
ACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAA5830.10315115270970825No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)