FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004924412

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924412
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12575028
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC412750.32822988545234255No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC398230.31668319148076646No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG369650.2939556078920858No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT333640.2653194887518342No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA325540.25887815120570706No Hit
AAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATC255010.2027908009429482No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT251560.20004726828441255No Hit
ATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGC248820.197868346694735No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT244260.19424211222432267No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACT244120.19413078046426618No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA205050.16306126713992208No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT203560.1618763791221777No Hit
ACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAA203550.16186842685360225No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG189390.15060801455074296No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT166390.13231779682717207No Hit
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG164230.1306001068148715No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT163990.1304092523690603No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG162950.1295822164372119No Hit
CCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTA154600.12294207217669814No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT153250.1218685159190103No Hit
GGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGC150340.1195544057635498No Hit
CTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAG148250.11789238163127749No Hit
CAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCA142860.11360610886910152No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC133140.10587650381374897No Hit
CAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCC132650.10548684265355115No Hit
AATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGG128770.10240136244627049No Hit
GCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCTC128460.10215484212043108No Hit
GCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTC126510.10060414974821527No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)