FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004924423

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924423
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18014961
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC494090.2742664832857534No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT482220.2676775153718068No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG371210.20605651047482149No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT362780.20137706653930587No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA354000.19650333964086852No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC292790.1625260248967511No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA287580.1596339842201157No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT271220.15055264343897276No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG253620.14078298587490698No Hit
CAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTGTCGC253360.14063866138816508No Hit
TGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAG226220.12557340534903183No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG218450.12126032357216872No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT201910.11207906583866599No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC200090.11106879443147281No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA200000.11101883595529294No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT183920.10209292154448737No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT183060.10161554054987963No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA180820.10037212958718034No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)