FastQCFastQC Report
Mon 12 Sep 2022
EGAF00004924429

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924429
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5249212
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC237930.45326803337339017No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC211330.4025937607397072No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT192370.36647405362938285No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA143040.2724980435158648No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT140020.2667447990288828No Hit
CTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACTATTCCTC111900.21317485367327518No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT101460.19328615418847628No Hit
CTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAG87890.1674346549539245No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT84990.16191001620814705No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT81610.15547095449755124No Hit
CAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCA80330.1530324932580357No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG78710.1499463157517738No Hit
ACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAA76200.14516464566491122No Hit
CAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCC68290.13009571722384236No Hit
ATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGC65680.12512354235264264No Hit
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG64770.12338994881517455No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC64500.12287558589746422No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT64100.12211356676011562No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG63390.12076098279132182No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACT60250.1147791325631352No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT58610.11165485410000588No Hit
CCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTA58230.11093093591952469No Hit
CTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAG55040.10485383329916946No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)