FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004924435

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924435
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13686030
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC427510.3123696207008168No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG421550.3080148151070836No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC405890.2965724903423418No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACT371010.27108664820989No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT334740.24458517188695336No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT320690.23431922917018302No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA281080.2053773081017651No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT280300.20480738387976646No Hit
AAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATC258220.18867414436472812No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT254220.1857514560467864No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA250970.18337677178845874No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT235610.1721536486475625No Hit
ATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGC231930.16946477539505614No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG215170.1572187113428803No Hit
ACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAA196910.14387663917147633No Hit
TTTACATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTA186850.13652607805185288No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT181420.13255852866024698No Hit
CCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTA174350.12739267705828497No Hit
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG170490.1245722828314712No Hit
AATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGG165480.1209116157132492No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG158980.11616224719659389No Hit
GGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGC154270.11272078170221753No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC150970.1103095638399156No Hit
CAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCA149970.10957889176043016No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT148900.10879707263538076No Hit
CAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCC142510.10412807804746885No Hit
CTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAG137660.1005843184619645No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)