FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004924443

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924443
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18112160
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCA515690.28472032049186846No Hit
GGAGTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGC342570.18913812598828633No Hit
ATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAA322720.17817863799789754No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC299150.16516528122543087No Hit
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAAC294350.16251512795823359No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAG244620.1350584358795417No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA240440.13275059407602408No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG236760.13071880990450613No Hit
GCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACCAGGATT226810.12522526302771178No Hit
CAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGG213650.11795942615347921No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG204600.11296278301428432No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)