FastQCFastQC Report
Wed 1 May 2024
EGAF00004924446

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924446
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17322157
Total Bases2.6 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA696930.4023344205920775No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT626490.3616697389360921No Hit
TGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAG393200.22699251600132708No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA333860.19273581228942793No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC333810.192706947523914No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT318970.18413988511938784No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACAAGCCC301430.17401412537711095No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC297340.17165298755807376No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG254440.14688701874714563No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG253920.14658682518580105No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA248660.14355025185373854No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT211290.12197672610864801No Hit
GGAGAGACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACA199300.11505495533841426No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC198290.11447188707503343No Hit
CGGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCG195540.11288432497176881No Hit
GGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCGGG188160.10862388558191685No Hit
GGAGAGACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACA177410.10241796099642789No Hit
CTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGTGGAA177190.1022909560281667No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT177070.10222168059093333No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT176700.10200808132613047No Hit
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAAC173820.10034547083252968No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)