FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004924479

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924479
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15612118
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT430450.27571531293832136No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC381480.24434865275806908No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT377380.24172248762147458No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA337830.21638960197456872No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA293820.18819996108151374No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT283920.18185873306876107No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC263250.16861901761183204No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC254400.16295034408528042No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA254210.16282864374968214No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG244740.15676284281223085No Hit
TGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAG241240.15452099452489407No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG240220.1538676558811559No Hit
CCTAGAGGCAGCTGCTCCAGGAACAGAGGTGCCATGCAGCCCCGGGTACT219530.14061512986258495No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG205500.13162852087077487No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT203550.13037949111068722No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT198910.1274074408097607No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT191410.12260348019403902No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT180860.1158459089279238No Hit
CTCATTCTTGGCAGGATGGCTTCTCATCGTCTGCTCCTCCTCTGCCTTGC178950.11462250029112002No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC177800.11388589299670936No Hit
CTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGTGGAA170210.109024284853599No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC166580.10669916791558967No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)